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InterMine Server Documentation
Docs
Blog
InterMine
GitHub
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5.0.0
4.0.0
Legacy Documentation
InterMine Server Documentation
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InterMine Documentation
System Requirements
Hardware
Software
Requirements
Git
Java
Perl
PostgreSQL
Installing PostgreSQL
HikariCP and InterMine settings
Tomcat
Mac Installation Notes
Maven
Intellij
Solr
Gradle
Gradle - Quick Start
Gradle - FAQs
Get started
Tutorial
Tutorial - Configure your InterMine webapp!
Data files to integrate
Quick Start
Create Your Own InterMine!
Testmine
InterMine Tests
InterMine
InterMine JARs
Upgrading InterMine
InterMine Development Roadmap
InterMine Versioning Policy
Building Javadoc
Contribution Guide
How to set up your InterMine environment on the Amazon Cloud
Data Model
Data Model Overview
Model Description
Using Class and Field Labels
The PathQuery API
Querying over genomic ranges
Decorating your model with ontologies
Database
Data Download Scripts
Data Sources
Data Source Library
Data Source Library Overview
Gene Ontology
GO Annotation
GO OBO
Homologue Data Sources
Homologue Data Sources Overview
Treefam
Homologene
OrthoDB
Panther
Ensembl Compara
Interactions
BioGRID
IntAct
IntAct - complexes
PSI-MI Ontology
Pathway data sources
KEGG
Reactome
Proteins
UniProt
InterPro
Publications
PubMed
Publications
NCBI - Entrez gene
Chado
FASTA
GFF3
Identifier Data Sources
InterMine Items XML
OMIM
Organisms
Sequence Ontology (SO)
Uberon
Data Sources
Data Sets
VCF files
Writing your own data source
InterMine Items XML
InterMine Items XML Overview
Java Items API
Perl Items API
Python Items API
Id Resolvers
Data Licences
Database Building
Database Build
project_build script
Project XML
Data Integration
Model Merging
Primary Keys
Priority Configuration
Post processing
Post build updating with SQL triggers
Debugging
Data Integrity Checks
Template Comparison
Acceptance Tests
InterMine performance
Data loading performance
Query performance (precomputed tables)
Useful ObjectStore properties
Web Application
Guide to Customising BlueGenes
General Layout
Home page
Report Page
Report Page Overview
Report Displayers
Report Displayers Examples
Webapp Tables CSS & HTML
Permanent URLs
Lists
Lists page
List upload
List upgrade
List analysis
List Widgets
List Widgets
List Widgets Questions & Answers
List enrichment widgets statistics
Template Queries
Query Results
QueryBuilder
Keyword Search
Region Search
Customise Web Application
Database and Web application
Text and messages
Features
Data and Widget Configuration
Class keys
Setting Javascript Options
Data Categories
Web pages markup
Help
Linking in to your mine
How to set up your InterMine webapp to use https
Third party tools
Cytoscape network viewer
EsyN
Galaxy
GBrowse
Heatmap
JBrowse
Monitoring Site Usage
Google Analytics
InterMine User Tracking
Search Engines
Website Admin
User Accounts
Userprofile
Open ID
Performance
Diagnostic
Web Services
Web Services Overview
Authentication
Customising the default queries in your io-docs application
Embedding InterMine Components
Introduction
List Widgets
List Widgets
List Widgets Questions & Answers
List enrichment widgets statistics
Apps/C Grunt Build
Apps/C Grunt Build
Apps/C Usage
publication-search
elastic-med
InterMine JavaScript API Loader
InterMine JavaScript Library
Embedding examples
InterMine Video Tutorial Collection
Support
Mailing list
Troubleshooting tips
About Us
InterMine
Contact us
Privacy policy
This is documentation for InterMine Server Documentation
4.0.0
, which is no longer actively maintained.
For up-to-date documentation, see the
latest version
(5.0.0).
Version: 4.0.0
InterMine JavaScript Library
Please refer to
this repo
for more information.
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