Data Sets

Load an XML file with details of your data sets and associated information, e.g. description and URL

Types of data loaded

Update data source and data set entries

How to download the data

Create your own datasets.xml file with your data in InterMine items XML format and put in your mine's dbmodel/resources directory so that it's on your classpath.

<?xml version="1.0"?>

<items>

<item id="09" class="" implements="DataSource">

<attribute name="name" value="NCBI"/>

<attribute name="description" value="National Centre for Biotechnology Information"/>

<attribute name="url" value="https://www.ncbi.nlm.nih.gov"/>

</item>

<item id="10" class="" implements="DataSet">

<attribute name="name" value="Homo sapiens genome sequence"/>

<attribute name="description" value="Release GRCh38 of the Homo sapiens genome sequence"/>

<attribute name="version" value="GRCh38.p12"/>

<attribute name="url" value="https://www.ncbi.nlm.nih.gov"/>

<reference name="dataSource" ref_id="09"/>

</item>

</items>

How to load the data into your mine

project XML example

<source name="flymine-static" type="flymine-static">

<property name="src.data.file" location="/data/datasets.xml"/>

</source>