Reactome

Types of data loaded

proteins, genes, pathways

How to download the data

http://www.reactome.org/download/current/UniProt2Reactome_All_Levels.txt

How to load the data into your mine

project XML example

<source name="reactome" type="reactome">

<property name="src.data.dir" location="/data/reactome" />

<property name="reactome.organisms" value="9606 10090" />

</source>

This source contains a task to copy the pathways from the proteins to the related genes. To include this, add this to the post-processing section of your project XML file:

<post-processing>

<post-process name="do-sources" />

...

</post-processing>

See Post processing for more information on post-processing.