Treefam

Data

ftp://ftp.sanger.ac.uk/pub/treefam/release-7.0/MySQL

Download two tables:

• genes.txt.table
• ortholog.txt.table

Project XML

<source name="treefam" type="treefam">

<property name="src.data.dir" location="/DATA/treefam"/>

<property name="src.data.dir.includes" value="ortholog.txt.table"/>

<property name="geneFile" value="/DATA/treefam/genes.txt.table"/>

<property name="treefam.organisms" value="7227 6239 7165 4932"/>

<property name="treefam.homologues" value="9606 10090 10116 7955"/>

</source>

• '''treefam.organisms''' - all genes from the listed organisms will be processed
• '''treefam.homologues''' (optional) - genes will only be loaded into the database if they are a homologue of an organism of interest