Version: Next
GO Annotation
Loads gene association files that link GO terms to genes or proteins.
Types of data loaded#
genes, proteins, GO terms, publications, GO evidence
How to download the data#
The data is available from http://www.geneontology.org
Configuration file (optional)#
There is an optional configuration file that let's you determine which type of object you create, and which identifier field you set. If your annotation file annotates genes and uses the primary identifier, these are the default values and you do not need to update the configuration file.
| parameter | definition | possible values |
|---|---|---|
| typeAnnotated | class of what is being annotated | gene (default) or protein |
| identifier | which field to set | primaryIdentifier (default), symbol, or primaryAccession |
| readcolumn [1] | which column to use for identifier | identifier (default) or symbol |
[1] See http://geneontology.org/docs/go-annotation-file-gaf-format-2.1/ for column descriptions
How to load the data into your mine#
project XML example