Version: 5.0.0

VCF files

Load SNP data from a VCF file

Types of data loaded#

SNPs

How to download the data#

First you will need a VCF file, here is an example:

ftp://ftp.ensembl.org/pub/release-79/variation/vcf/homo_sapiens/

How to load the data into your mine#

Add vcf to the list of datasources to be integrated#

<source name="my-data-source" type="vcf">
<property name="src.data.dir" location="/data/variation/current" />
<property name="vcf.includes" value="*.vcf" />
<property name="vcf.vcfTaxonId" value="9606" />
<property name="vcf.vcfDataSetTitle" value="Ensembl SNP data set" />
<property name="vcf.vcfDataSourceName" value="Ensembl" />
</source>