Index (InterMine Web Service Client 3.1.0)

A B C D E F G H I J L M N O P Q R S T U V W X
All Classes All Packages

A

AbstractQueryService<T> - Class in org.intermine.client.services: Common behaviour for services requesting results from a web-service.
AbstractQueryService(String, String, String) - Constructor for class org.intermine.client.services.AbstractQueryService: Constructor.
add(int, Object) - Method in class org.intermine.client.results.ResultRowList
add(Object) - Method in class org.intermine.client.results.ResultRowList
add(Item) - Method in class org.intermine.client.lists.ItemList
addAll(int, Collection<? extends Object>) - Method in class org.intermine.client.results.ResultRowList
addAll(Collection) - Method in class org.intermine.client.lists.ItemList
addAll(Collection<? extends Object>) - Method in class org.intermine.client.results.ResultRowList
addParameter(String, String) - Method in interface org.intermine.client.core.Request: Adds parameter.
addParameter(String, String) - Method in class org.intermine.client.core.RequestImpl: Adds parameter.
addTag(String) - Method in class org.intermine.client.services.ListService.ListOperationInfo: Add a tag to the set of tags to apply.
addTags(String...) - Method in class org.intermine.client.lists.ItemList: Add some new tags to this list.
addTags(Collection<? extends String>) - Method in class org.intermine.client.services.ListService.ListOperationInfo: Add some tags to the set of tags to apply.
addTags(ItemList, String...) - Method in class org.intermine.client.services.ListService: Get the tags for a list after adding some to the tag set.
addUnmatchedId(String) - Method in class org.intermine.client.lists.ItemList: Add a new unmatched id to the set of unmatched identifiers.
addUnmatchedIds(Collection<String>) - Method in class org.intermine.client.lists.ItemList: Add some new unmatched ids to the set of unmatched identifiers.
advance(int) - Method in class org.intermine.client.results.Page: Advance to a new page my a given number of steps.
append(String...) - Method in class org.intermine.client.lists.ItemList: Add new items to the list by resolving the identifiers of objects.
append(Collection<? extends String>) - Method in class org.intermine.client.lists.ItemList: Add new items to the list by resolving the identifiers of objects.
append(ItemList, String...) - Method in class org.intermine.client.services.ListService: Append some objects corresponding to identifiers to the given list, returning a list representing the new state.
append(ItemList, Collection<? extends String>) - Method in class org.intermine.client.services.ListService: Append some objects corresponding to identifiers to the given list, returning a list representing the new state.
append(ItemList, PathQuery) - Method in class org.intermine.client.services.ListService: Append the objects contained in the result set of a given query to the given list, returning a list representing the new state.
append(Item...) - Method in class org.intermine.client.lists.ItemList: Add new items to the list.
append(PathQuery) - Method in class org.intermine.client.lists.ItemList: Add new items to the list by resolving the identifiers of objects.
APPLICATION_JSON - Static variable in class org.intermine.client.core.ContentType: A ContentType constant that describes the JSON content type.
APPLICATION_JSON_OBJ - Static variable in class org.intermine.client.core.ContentType: A Content type that describes the JSON objects content type.
APPLICATION_JSON_ROW - Static variable in class org.intermine.client.core.ContentType: A Content type that describes the JSON rows content type.
assureOutputFormatSpecified(Request) - Method in class org.intermine.client.core.Service: Add a format parameter to match the content-type if there is one.

B

BadRequestException - Exception in org.intermine.client.exceptions: The BadRequestException is thrown by service when there is a problem with the request.
BadRequestException(String) - Constructor for exception org.intermine.client.exceptions.BadRequestException
BadRequestException(String, Throwable) - Constructor for exception org.intermine.client.exceptions.BadRequestException
BadRequestException(Throwable) - Constructor for exception org.intermine.client.exceptions.BadRequestException
BadRequestException(HttpConnection) - Constructor for exception org.intermine.client.exceptions.BadRequestException

C

checkResponse() - Method in class org.intermine.client.util.HttpConnection: Called to check the response and generate an appropriate exception (on failure).
clear() - Method in class org.intermine.client.results.ResultRowList
clearCache() - Method in class org.intermine.client.core.Service: Clear the cache on this object.
clearCache() - Method in class org.intermine.client.services.ModelService
close() - Method in class org.intermine.client.util.HttpConnection: Closes connection.
connect() - Method in class org.intermine.client.util.HttpConnection: Opens connection.
contains(Object) - Method in class org.intermine.client.lists.ItemList
contains(Object) - Method in class org.intermine.client.results.ResultRowList
contains(ItemList, Item...) - Method in class org.intermine.client.services.ListService: Report whether the given list contains all the items in the supplied array.
containsAll(Collection) - Method in class org.intermine.client.lists.ItemList
containsAll(Collection<?>) - Method in class org.intermine.client.results.ResultRowList
ContentType - Class in org.intermine.client.core: Simple class wrapping content type information.
createGetRequest(String, ContentType) - Method in class org.intermine.client.core.Service: Creates GET request.
createList(ListService.ListCreationInfo) - Method in class org.intermine.client.services.ListService: Create a new list on the server by specifying its content.
createPathQuery(String) - Method in class org.intermine.client.services.QueryService: Constructs a PathQuery from its XML representation.
createPostRequest(String, ContentType) - Method in class org.intermine.client.core.Service: Creates POST request.

D

DEFAULT - Static variable in class org.intermine.client.results.Page: The default page size (from the beginning to the maximum page size)
delete() - Method in class org.intermine.client.lists.ItemList: Call for this list to be deleted on the server.
DELETE - org.intermine.client.core.Request.RequestType: DELETE type
deleteList(ItemList) - Method in class org.intermine.client.services.ListService: Deletes a list on the server.
diff(Collection<ItemList>) - Method in class org.intermine.client.services.ListService: Find the symmetric difference of one or more lists to produce a new list.
diff(ItemList...) - Method in class org.intermine.client.services.ListService: Find the symmetric difference of one or more lists to produce a new list.
diff(ListService.ListOperationInfo, Collection<ItemList>) - Method in class org.intermine.client.services.ListService: Find the symmetric difference of one or more lists to produce a new list.
diff(ListService.ListOperationInfo, ItemList...) - Method in class org.intermine.client.services.ListService: Find the symmetric difference of one or more lists to produce a new list.

E

entrySet() - Method in class org.intermine.client.results.JsonRowMap
entrySet() - Method in class org.intermine.client.results.ResultRowMap
equals(Object) - Method in class org.intermine.client.results.Item: Determine whether this object is equal to the other.
equals(Object) - Method in class org.intermine.client.results.Page
ERROR_CODE - Static variable in exception org.intermine.client.exceptions.ServiceException
ErrorMessageParser - Class in org.intermine.client.util: Parses service error message.
executeRequest(Request) - Method in class org.intermine.client.core.Service: Open connection and returns connection.

F

find(Map<String, Object>) - Method in class org.intermine.client.lists.ItemList: Convenience method for finding members of a collection matching certain properties.
first() - Method in class org.intermine.client.results.Page: Get the first page.
FORMAT_PARAMETER_COUNT - Static variable in class org.intermine.client.core.RequestImpl
FORMAT_PARAMETER_JSON_OBJ - Static variable in class org.intermine.client.core.RequestImpl
FORMAT_PARAMETER_JSON_ROWS - Static variable in class org.intermine.client.core.RequestImpl
FORMAT_PARAMETER_XML - Static variable in class org.intermine.client.core.RequestImpl

G

get(int) - Method in class org.intermine.client.lists.ItemList: Get an item by its index.
get(int) - Method in class org.intermine.client.results.JsonRow
get(int) - Method in class org.intermine.client.results.ResultRowList
get(Object) - Method in class org.intermine.client.results.JsonRowMap
get(Object) - Method in class org.intermine.client.results.ResultRowMap
GET - org.intermine.client.core.Request.RequestType: GET type.
getAccessibleLists() - Method in class org.intermine.client.services.ListService: Returns all the lists that this service has access to.
getAllJSONResults(String) - Method in class org.intermine.client.services.QueryService: Fetch all the results as a list of JSON Objects
getAllJSONResults(String, List<TemplateParameter>) - Method in class org.intermine.client.services.TemplateService: Returns all the results for the given template template with the given parameters, as JSON objects (see @link {http://www.intermine.org/wiki/JSONObjectFormat}).
getAllJSONResults(T) - Method in class org.intermine.client.services.AbstractQueryService: Returns all the results for the given template template, as JSON objects (see @link {http://www.intermine.org/wiki/JSONObjectFormat}).
getAllResults(String) - Method in class org.intermine.client.services.QueryService: Returns all of the results of the specified PathQuery.
getAllResults(String, List<TemplateParameter>) - Method in class org.intermine.client.services.TemplateService: Returns all the results for the given template template with the given parameters.
getAllResults(T) - Method in class org.intermine.client.services.AbstractQueryService: Returns all the results for the given template template.
getAllRowIterator(String) - Method in class org.intermine.client.services.QueryService: Returns all the results of a specified PathQuery as an iterator.
getAllRowsIterator(String, List<TemplateParameter>) - Method in class org.intermine.client.services.TemplateService: Returns all the rows for the template when run with the given parameters.
getAllRowsIterator(T) - Method in class org.intermine.client.services.AbstractQueryService: Returns an iterator over all the rows for the template.
getAPIVersion() - Method in class org.intermine.client.core.Service
getApplicationName() - Method in class org.intermine.client.core.Service
getAverage() - Method in class org.intermine.client.services.QueryService.NumericSummary
getBoolean(String) - Method in class org.intermine.client.results.Item: Get a property known to be an boolean.
getCharSet() - Method in class org.intermine.client.core.ContentType
getChartType() - Method in class org.intermine.client.widget.Widget
getChartWidgets() - Method in class org.intermine.client.services.WidgetService
getCode() - Method in class org.intermine.client.template.TemplateParameter
getCollection(String) - Method in class org.intermine.client.results.Item: Get a set of items representing the elements in a collection field on an item.
getColumn() - Method in class org.intermine.client.services.QueryService.NumericSummary
getContentType() - Method in interface org.intermine.client.core.Request
getContentType() - Method in class org.intermine.client.core.RequestImpl
getCount(String) - Method in class org.intermine.client.services.QueryService: Returns the number of results the specified query will return.
getCount(String, List<TemplateParameter>) - Method in class org.intermine.client.services.TemplateService: Returns the number of results the specified template will return.
getCount(PathQuery) - Method in class org.intermine.client.services.QueryService
getCount(TemplateQuery) - Method in class org.intermine.client.services.TemplateService
getCreatedAt() - Method in class org.intermine.client.lists.ItemList: Get the date when this list was created.
getData() - Method in class org.intermine.client.results.RowResultSet
getData() - Method in class org.intermine.client.results.TabTableResult
getData() - Method in class org.intermine.client.results.XMLTableResult
getDescription() - Method in class org.intermine.client.lists.ItemList
getDescription() - Method in class org.intermine.client.widget.Widget
getDouble(String) - Method in class org.intermine.client.results.Item: Get a property known to be a double.
getEncodedUrl() - Method in interface org.intermine.client.core.Request
getEncodedUrl() - Method in class org.intermine.client.core.RequestImpl
getEnrichmentWidgets() - Method in class org.intermine.client.services.WidgetService
getExtraValue() - Method in class org.intermine.client.template.TemplateParameter
getFactory() - Method in class org.intermine.client.core.Service: Get the ServiceFactory this service was constructed with.
getFilters() - Method in class org.intermine.client.widget.Widget
getFloat(String) - Method in class org.intermine.client.results.Item: Get a property known to be an float.
getHeader(String) - Method in interface org.intermine.client.core.Request: Returns the header value.
getHeader(String) - Method in class org.intermine.client.core.RequestImpl: Returns the header value.
getHeaders() - Method in interface org.intermine.client.core.Request: Returns request headers.
getHeaders() - Method in class org.intermine.client.core.RequestImpl: Returns request headers.
getHttpErrorCode() - Method in exception org.intermine.client.exceptions.BadRequestException
getHttpErrorCode() - Method in exception org.intermine.client.exceptions.InternalErrorException
getHttpErrorCode() - Method in exception org.intermine.client.exceptions.NotImplementedException
getHttpErrorCode() - Method in exception org.intermine.client.exceptions.ResourceNotFoundException
getHttpErrorCode() - Method in exception org.intermine.client.exceptions.ServiceException
getHttpErrorCode() - Method in exception org.intermine.client.exceptions.ServiceForbiddenException
getHttpErrorCode() - Method in exception org.intermine.client.exceptions.ServiceUnavailableException
getId() - Method in class org.intermine.client.results.Item: Get the internal database id of the object.
getInt(String) - Method in class org.intermine.client.results.Item: Get a property known to be an integer.
getIntResponse(Request) - Method in class org.intermine.client.core.Service: Performs the request and returns the result as an integer.
getIterator() - Method in class org.intermine.client.results.JSONResult
getIterator() - Method in class org.intermine.client.results.TabTableResult: Get a memory efficient iterator over the result rows as lists
getIterator() - Method in class org.intermine.client.results.XMLTableResult
getJSONResponse(Request) - Method in class org.intermine.client.services.AbstractQueryService: Performs the request and returns a JSONResult containing the data.
getJSONResults(String, List<TemplateParameter>, Page) - Method in class org.intermine.client.services.TemplateService: Returns a subset of the results for the given template template with the given parameters, as JSON objects (see @link {http://www.intermine.org/wiki/JSONObjectFormat}).
getJSONResults(String, Page) - Method in class org.intermine.client.services.QueryService: Fetch some results as a list of JSON Objects.
getJSONResults(PathQuery, Page) - Method in class org.intermine.client.services.QueryService
getJSONResults(TemplateQuery, Page) - Method in class org.intermine.client.services.TemplateService
getList(String) - Method in class org.intermine.client.services.ListService: Returns an object representing a list on the server.
getListIterator() - Method in class org.intermine.client.results.RowResultSet: Get a memory efficient iterator over the result rows as lists
getListMap() - Method in class org.intermine.client.services.ListService: Returns a map from list-name to list.
getListService() - Method in class org.intermine.client.core.ServiceFactory: Return a new ListService for getting getting list information from.
getListsWithObject(int) - Method in class org.intermine.client.services.ListService: Returns all accessible InterMine public lists containing the object with the specified DB identifier.
getListsWithObject(String, String) - Method in class org.intermine.client.services.ListService: Returns all accessible InterMine lists containing the object corresponding to the specified publicId.
getMapIterator() - Method in class org.intermine.client.results.RowResultSet: Get a memory efficient iterator over the result rows as lists
getMax() - Method in class org.intermine.client.services.QueryService.NumericSummary
getMessage() - Method in exception org.intermine.client.exceptions.ResultException
getMessage() - Method in exception org.intermine.client.exceptions.ServiceException
getMin() - Method in class org.intermine.client.services.QueryService.NumericSummary
getModel() - Method in class org.intermine.client.core.ServiceFactory: A convenience method to getting a model (used widely throughout the API).
getModel() - Method in class org.intermine.client.services.ModelService: Returns the model used by the InterMine instance which the service is connected to.
getModelService() - Method in class org.intermine.client.core.ServiceFactory: Return a new ModelService for retrieving the data model.
getModelXml() - Method in class org.intermine.client.services.ModelService: An method used internally to fetch the XML for the model from the server.
getName() - Method in class org.intermine.client.lists.ItemList: Get the name of this list.
getName() - Method in class org.intermine.client.widget.Widget
getNextLine() - Method in class org.intermine.client.results.ResultSet: Get the next line of results.
getNumericSummary(PathQuery, String) - Method in class org.intermine.client.services.QueryService: Get a summary for the values in column of a query.
getObjects() - Method in class org.intermine.client.results.JSONResult
getOperation() - Method in class org.intermine.client.template.TemplateParameter
getParameter(String) - Method in interface org.intermine.client.core.Request: Use only if you are sure, that the parameter has only one value else use getParameterValues method.
getParameter(String) - Method in class org.intermine.client.core.RequestImpl: Use only if you are sure, that the parameter has only one value else use getParameterValues method.
getParameterMap() - Method in interface org.intermine.client.core.Request: Returns all parameters as an unmodifiable map.
getParameterMap() - Method in class org.intermine.client.core.RequestImpl: Returns all parameters as an unmodifiable map.
getParameterNames() - Method in interface org.intermine.client.core.Request
getParameterNames() - Method in class org.intermine.client.core.RequestImpl
getParameterValues(String) - Method in interface org.intermine.client.core.Request
getParameterValues(String) - Method in class org.intermine.client.core.RequestImpl
getParts() - Method in class org.intermine.client.core.MultiPartRequest
getPathId() - Method in class org.intermine.client.template.TemplateParameter
getProperties() - Method in class org.intermine.client.results.Item: Return a view of the properties in this row.
getQueryService() - Method in class org.intermine.client.core.ServiceFactory: Return a new QueryService for getting query results from.
getReader() - Method in class org.intermine.client.results.ResultSet: Get a reader over the data, for reading line-by-line.
getReason() - Method in exception org.intermine.client.exceptions.ResultException: Get the reason for this error.
getReference(String) - Method in class org.intermine.client.results.Item: Get in Item representing the record referenced by a reference field.
getResponseBodyAsStream() - Method in class org.intermine.client.util.HttpConnection
getResponseBodyAsString() - Method in class org.intermine.client.util.HttpConnection: Return the response body, ensuring that the connection is closed upon completion.
getResponseCode() - Method in class org.intermine.client.util.HttpConnection
getResponseHeader(String) - Method in class org.intermine.client.util.HttpConnection
getResponseStream() - Method in class org.intermine.client.util.HttpConnection
getResponseTable(Request) - Method in class org.intermine.client.services.AbstractQueryService: Performs the actual remote request and fetches the results.
getResults() - Method in class org.intermine.client.results.JSONResult
getResults(String, List<TemplateParameter>, Page) - Method in class org.intermine.client.services.TemplateService: Returns a set of the results for the given template template with the given parameters, defined by the index of the first result you want back, and the maximum page size.
getResults(String, Page) - Method in class org.intermine.client.services.QueryService: Returns a specific set of the results of the specified PathQuery.
getResults(PathQuery, Page) - Method in class org.intermine.client.services.QueryService
getResults(TemplateQuery, Page) - Method in class org.intermine.client.services.TemplateService
getRootUrl() - Method in class org.intermine.client.core.Service: Returns service's root URL.
getRowIterator(String, List<TemplateParameter>, Page) - Method in class org.intermine.client.services.TemplateService: Returns an iterator over a subset of rows for the template when run with the given parameters.
getRowIterator(String, Page) - Method in class org.intermine.client.services.QueryService: Returns a specific set of the results of a specified PathQuery as an iterator.
getRowIterator(PathQuery, Page) - Method in class org.intermine.client.services.QueryService
getRowIterator(TemplateQuery, Page) - Method in class org.intermine.client.services.TemplateService
getRowListIterator(String) - Method in class org.intermine.client.services.QueryService: Get an iterator over the results of a query.
getRowListIterator(String, List<TemplateParameter>) - Method in class org.intermine.client.services.TemplateService: Get an iterator over the results of a query.
getRowListIterator(String, List<TemplateParameter>, Page) - Method in class org.intermine.client.services.TemplateService: Get an iterator over the results of a query.
getRowListIterator(String, Page) - Method in class org.intermine.client.services.QueryService: Get an iterator over the results of a query.
getRowListIterator(T) - Method in class org.intermine.client.services.AbstractQueryService: Get an iterator over the results of a query.
getRowListIterator(T, Page) - Method in class org.intermine.client.services.AbstractQueryService: Get an iterator over the results of a query.
getRowMapIterator(String) - Method in class org.intermine.client.services.QueryService: Get an iterator over the results of a query.
getRowMapIterator(String, List<TemplateParameter>) - Method in class org.intermine.client.services.TemplateService: Get an iterator over the results of a query.
getRowMapIterator(String, List<TemplateParameter>, Page) - Method in class org.intermine.client.services.TemplateService: Get an iterator over the results of a query.
getRowMapIterator(String, Page) - Method in class org.intermine.client.services.QueryService: Get an iterator over the results of a query.
getRowMapIterator(T) - Method in class org.intermine.client.services.AbstractQueryService: Get an iterator over the results of a query.
getRowMapIterator(T, Page) - Method in class org.intermine.client.services.AbstractQueryService: Get an iterator over the results of a query.
getRows(Request, List<String>) - Method in class org.intermine.client.services.AbstractQueryService: Performs the actual remote request and fetches the results.
getRows(PathQuery, Page) - Method in class org.intermine.client.services.QueryService
getRows(TemplateQuery, Page) - Method in class org.intermine.client.services.TemplateService
getRowsAsLists() - Method in class org.intermine.client.results.RowResultSet: Get the data for this result set in a parsed form.
getRowsAsLists(String) - Method in class org.intermine.client.services.QueryService: Get results for a query as rows of objects.
getRowsAsLists(String, List<TemplateParameter>) - Method in class org.intermine.client.services.TemplateService: Get results for a query as rows of objects.
getRowsAsLists(String, List<TemplateParameter>, Page) - Method in class org.intermine.client.services.TemplateService: Get results for a query as rows of objects.
getRowsAsLists(String, Page) - Method in class org.intermine.client.services.QueryService: Get results for a query as rows of objects.
getRowsAsLists(T) - Method in class org.intermine.client.services.AbstractQueryService: Get results for a query as rows of objects.
getRowsAsLists(T, Page) - Method in class org.intermine.client.services.AbstractQueryService: Get results for a query as rows of objects.
getRowsAsMaps() - Method in class org.intermine.client.results.RowResultSet: Get the data for this result set in a parsed form.
getRowsAsMaps(String) - Method in class org.intermine.client.services.QueryService: Get results for a query as rows of objects.
getRowsAsMaps(String, List<TemplateParameter>) - Method in class org.intermine.client.services.TemplateService: Get results for a query as rows of objects.
getRowsAsMaps(String, List<TemplateParameter>, Page) - Method in class org.intermine.client.services.TemplateService: Get results for a query as rows of objects.
getRowsAsMaps(String, Page) - Method in class org.intermine.client.services.QueryService: Get results for a query as rows of objects.
getRowsAsMaps(T) - Method in class org.intermine.client.services.AbstractQueryService: Get results for a query as rows of objects.
getRowsAsMaps(T, Page) - Method in class org.intermine.client.services.AbstractQueryService: Get results for a query as rows of objects.
getService(String, String) - Method in class org.intermine.client.core.ServiceFactory: Creates a new service for general use.
getServiceUrl() - Method in interface org.intermine.client.core.Request: Returns service URL.
getServiceUrl() - Method in class org.intermine.client.core.RequestImpl: Returns service URL.
getSize() - Method in class org.intermine.client.lists.ItemList
getSize() - Method in class org.intermine.client.results.Page: Get the maximum size of this page.
getStandardDeviation() - Method in class org.intermine.client.services.QueryService.NumericSummary
getStar(Model, String) - Static method in class org.intermine.client.util.PQUtil: Get a list of all the path-strings for the attributes of a given class.
getStart() - Method in class org.intermine.client.results.Page: Get the start index of this page.
getStatus() - Method in class org.intermine.client.lists.ItemList: Any status other than CURRENT indicated this list needs manual attention in the webapp.
getString(String) - Method in class org.intermine.client.results.Item: Get a property known to be a string.
getStringResponse(Request, Integer) - Method in class org.intermine.client.core.Service: Performs the request and returns the result as a string.
getSubType() - Method in class org.intermine.client.core.ContentType
getSummary(PathQuery, String) - Method in class org.intermine.client.services.QueryService: Get a summary for the values in column of a query.
getSummary(PathQuery, String, Page) - Method in class org.intermine.client.services.QueryService: Get a summary for the values in column of a query.
getTags() - Method in class org.intermine.client.lists.ItemList: Modifying the returned set will not change the underlying tags collection.
getTags(ItemList) - Method in class org.intermine.client.services.ListService: Get the most current tag set for a list.
getTagString() - Method in class org.intermine.client.services.ListService.ListOperationInfo: Get the tags joined in the manner required for the list service.
getTargets() - Method in class org.intermine.client.widget.Widget
getTemplate(String) - Method in class org.intermine.client.services.TemplateService: Get the template with the given name, if accessible.
getTemplateNames() - Method in class org.intermine.client.services.TemplateService: Get the names of the templates to which the current user has access.
getTemplates() - Method in class org.intermine.client.services.TemplateService: Get the templates to which the current user has access.
getTemplateService() - Method in class org.intermine.client.core.ServiceFactory: Return a new QueryService for getting query results from.
getTemplatesForType(String) - Method in class org.intermine.client.services.TemplateService: Get all the templates with constraints which constrain paths of a certain type.
getTitle() - Method in class org.intermine.client.widget.Widget
getType() - Method in class org.intermine.client.core.ContentType
getType() - Method in interface org.intermine.client.core.Request
getType() - Method in class org.intermine.client.core.RequestImpl
getType() - Method in class org.intermine.client.lists.ItemList
getType() - Method in class org.intermine.client.results.Item: Get the type of this object.
getUnencodedUrl() - Method in interface org.intermine.client.core.Request
getUnencodedUrl() - Method in class org.intermine.client.core.RequestImpl
getUnmatchedIdentifiers() - Method in class org.intermine.client.lists.ItemList: Get the identifiers used in creating or appending to this list that could not be resolved to any objects.
getUnusedListName() - Method in class org.intermine.client.services.ListService.ListOperationInfo: Get a name for the list if none has been supplied.
getUrl() - Method in class org.intermine.client.core.Service: Returns service URL Example: http://www.flymine.org/flymine/service/query/results
getValue() - Method in class org.intermine.client.template.TemplateParameter: Returns value.
getValues() - Method in class org.intermine.client.template.TemplateParameter
getVersion() - Method in class org.intermine.client.core.Service
getWidget(String) - Method in class org.intermine.client.services.WidgetService
getWidgets() - Method in class org.intermine.client.services.WidgetService
getWidgetService() - Method in class org.intermine.client.core.ServiceFactory: Return the WidgetService for retrieving widget information.
getWidgetType() - Method in class org.intermine.client.widget.Widget
getXAxisLabel() - Method in class org.intermine.client.widget.Widget
getYAxisLabel() - Method in class org.intermine.client.widget.Widget

H

handleErrorResponse() - Method in class org.intermine.client.util.HttpConnection: Handles an error response received while executing a service request.
hashCode() - Method in class org.intermine.client.results.Item
hashCode() - Method in class org.intermine.client.results.Page
HttpConnection - Class in org.intermine.client.util: The HttpConnection is class wrapping implementation details of http connection and the implementation can change easily.
HttpConnection(Request) - Constructor for class org.intermine.client.util.HttpConnection

I

indexOf(Object) - Method in class org.intermine.client.results.ResultRowList
InternalErrorException - Exception in org.intermine.client.exceptions: The InternalErrorException is thrown by service when an error occurred at the server.
InternalErrorException(String) - Constructor for exception org.intermine.client.exceptions.InternalErrorException
InternalErrorException(String, Throwable) - Constructor for exception org.intermine.client.exceptions.InternalErrorException
InternalErrorException(Throwable) - Constructor for exception org.intermine.client.exceptions.InternalErrorException
InternalErrorException(HttpConnection) - Constructor for exception org.intermine.client.exceptions.InternalErrorException
intersect(Collection<ItemList>) - Method in class org.intermine.client.services.ListService: Intersect one or more lists to produce a new list.
intersect(ItemList...) - Method in class org.intermine.client.services.ListService: Intersect one or more lists to produce a new list.
intersect(ListService.ListOperationInfo, Collection<ItemList>) - Method in class org.intermine.client.services.ListService: Intersect one or more lists to produce a new list.
intersect(ListService.ListOperationInfo, ItemList...) - Method in class org.intermine.client.services.ListService: Intersect one or more lists to produce a new list.
isa(String) - Method in class org.intermine.client.results.Item: Determine whether this item belongs to the class of objects of the named type.
isAuthorized() - Method in class org.intermine.client.lists.ItemList
isChart() - Method in class org.intermine.client.widget.Widget
isEmpty() - Method in class org.intermine.client.results.ResultRowList
isEnrichment() - Method in class org.intermine.client.widget.Widget
isMultiValue() - Method in class org.intermine.client.template.TemplateParameter
isOpened() - Method in class org.intermine.client.util.HttpConnection
Item - Class in org.intermine.client.results: A representation of an individual result from the web-services.
Item(ServiceFactory, String, Map<String, Object>) - Constructor for class org.intermine.client.results.Item: Construct an Item.
ItemList - Class in org.intermine.client.lists: A representation of a list of objects stored on the server.
iterator() - Method in class org.intermine.client.lists.ItemList
iterator() - Method in class org.intermine.client.results.ResultRowList

J

JSONResult - Class in org.intermine.client.results
JSONResult(String) - Constructor for class org.intermine.client.results.JSONResult: Constructor with a string
JSONResult(HttpConnection) - Constructor for class org.intermine.client.results.JSONResult: Constructor
JsonRow - Class in org.intermine.client.results: Class representing a row of data as a list.
JsonRow(String) - Constructor for class org.intermine.client.results.JsonRow: Construct a new result row object backed by the JSONArray which can be parsed from the given String.
JsonRow(JSONArray) - Constructor for class org.intermine.client.results.JsonRow: Construct a new result row object backed by the given JSONArray.
JsonRowMap - Class in org.intermine.client.results: Class representing a row of data as a map.
JsonRowMap(String, List<String>) - Constructor for class org.intermine.client.results.JsonRowMap: Construct a result-row with a String as its backing data store.
JsonRowMap(JSONArray, List<String>) - Constructor for class org.intermine.client.results.JsonRowMap: Construct a result-row with a JSONArray as its backing data store.

L

last(int) - Method in class org.intermine.client.results.Page: Get the last page.
lastIndexOf(Object) - Method in class org.intermine.client.results.ResultRowList
ListCreationInfo(String) - Constructor for class org.intermine.client.services.ListService.ListCreationInfo: Create a new options bundle with all possible optional values set to their defaults.
ListCreationInfo(String, String) - Constructor for class org.intermine.client.services.ListService.ListCreationInfo: Create a new options bundle, with the name taken from the supplied value.
ListCreationInfo(String, String, String) - Constructor for class org.intermine.client.services.ListService.ListCreationInfo: Create a new options bundle, with the name and description taken from the supplied value.
ListCreationInfo(String, String, String, Collection<? extends String>) - Constructor for class org.intermine.client.services.ListService.ListCreationInfo: Create a new options bundle, specifying all parameters.
ListCreationInfo(PathQuery) - Constructor for class org.intermine.client.services.ListService.ListCreationInfo: Create a new options bundle, specifying the query to use to find objects with.
ListCreationInfo(PathQuery, String) - Constructor for class org.intermine.client.services.ListService.ListCreationInfo: Create a new options bundle, specifying the name.
ListCreationInfo(PathQuery, String, String) - Constructor for class org.intermine.client.services.ListService.ListCreationInfo: Create a new options bundle, specifying the name and the description.
ListCreationInfo(PathQuery, String, String, Collection<? extends String>) - Constructor for class org.intermine.client.services.ListService.ListCreationInfo: Create a new options bundle, specifying all parameters.
listIterator() - Method in class org.intermine.client.results.ResultRowList
listIterator(int) - Method in class org.intermine.client.results.ResultRowList
ListOperationInfo() - Constructor for class org.intermine.client.services.ListService.ListOperationInfo: Create a new options bundle with all values set to their defaults.
ListOperationInfo(String) - Constructor for class org.intermine.client.services.ListService.ListOperationInfo: Create a new options bundle, with all elements set to their default apart from the name, which is given.
ListOperationInfo(String, String) - Constructor for class org.intermine.client.services.ListService.ListOperationInfo: Create a new options bundle, with all elements set to their default apart from the name and the description, which are given.
ListOperationInfo(String, String, Collection<? extends String>) - Constructor for class org.intermine.client.services.ListService.ListOperationInfo: Create a new options bundle, specifying all options.
Lists - Class in org.intermine.client.lists: Utilities for parsing lists from their JSON representation.
ListService - Class in org.intermine.client.services: An interface to all the resources that represent list information and list operations available at an InterMine implementation.
ListService(String, String) - Constructor for class org.intermine.client.services.ListService: Use ServiceFactory instead of constructor for creating this service .
ListService.ListCreationInfo - Class in org.intermine.client.services: An abstraction of the combination of options that can be specified to generate a new list in a list creation operation.
ListService.ListOperationInfo - Class in org.intermine.client.services: An abstraction of the combination of options that can be specified to generate a new list in a list operation.

M

merge(Collection<ItemList>) - Method in class org.intermine.client.services.ListService: Merge one or more lists into a new list.
merge(ItemList...) - Method in class org.intermine.client.services.ListService: Merge one or more lists into a new list.
merge(ListService.ListOperationInfo, Collection<ItemList>) - Method in class org.intermine.client.services.ListService: Merge one or more lists into a new list.
merge(ListService.ListOperationInfo, ItemList...) - Method in class org.intermine.client.services.ListService: Merge one or more lists into a new list.
ModelService - Class in org.intermine.client.services: This class represents a connection to the RESTful resource on an InterMine server which provides information about the service's data model.
ModelService(String, String) - Constructor for class org.intermine.client.services.ModelService: Please do not instantiate this class yourself directly - instead use the ServiceFactory - this will ensure maintainability of your code.
MULTI_PART_FORM - Static variable in class org.intermine.client.core.ContentType: Content type for multi-part form requests.
MultiPartRequest - Class in org.intermine.client.core: A class for constructing multi-part form requests.
MultiPartRequest(String) - Constructor for class org.intermine.client.core.MultiPartRequest: Construct a new request to the given URL.

N

next() - Method in class org.intermine.client.results.Page: Get the next page.
NotConnectedException - Exception in org.intermine.client.exceptions: The NotConnectedException is thrown when some method requiring opened connection was called on closed HttpConnection.
NotConnectedException() - Constructor for exception org.intermine.client.exceptions.NotConnectedException: Default constructor.
NotConnectedException(String) - Constructor for exception org.intermine.client.exceptions.NotConnectedException
NotImplementedException - Exception in org.intermine.client.exceptions: The NotImplementedException is thrown by a service when an attempt is made to send a request that is not supported by the target service.
NotImplementedException(String) - Constructor for exception org.intermine.client.exceptions.NotImplementedException
NotImplementedException(String, Throwable) - Constructor for exception org.intermine.client.exceptions.NotImplementedException
NotImplementedException(Throwable) - Constructor for exception org.intermine.client.exceptions.NotImplementedException
NotImplementedException(HttpConnection) - Constructor for exception org.intermine.client.exceptions.NotImplementedException

O

org.intermine.client.core - package org.intermine.client.core
org.intermine.client.exceptions - package org.intermine.client.exceptions
org.intermine.client.lists - package org.intermine.client.lists
org.intermine.client.results - package org.intermine.client.results
org.intermine.client.services - package org.intermine.client.services
org.intermine.client.template - package org.intermine.client.template
org.intermine.client.util - package org.intermine.client.util
org.intermine.client.widget - package org.intermine.client.widget

P

Page - Class in org.intermine.client.results: Object representing a page parameter.
Page(int) - Constructor for class org.intermine.client.results.Page: Construct a new page, specifying a start point.
Page(int, int) - Constructor for class org.intermine.client.results.Page: Construct a new page, specifying a start point and a size.
parseError(String) - Static method in class org.intermine.client.util.ErrorMessageParser: Parses service error message.
parseList(ServiceFactory, JSONObject) - Static method in class org.intermine.client.lists.Lists: Parse a list from its representation in JSON.
parseListCreationInfo(ServiceFactory, String) - Static method in class org.intermine.client.lists.Lists: Construct a representation of a list from the data returned by a call to create a new list.
parseParameterMap(String) - Static method in class org.intermine.client.util.URLParser: Returns parameters of URL as parameter map where key in the map is the parameter name and value is list of parameter values.
parseServiceUrl(String) - Static method in class org.intermine.client.util.URLParser: Returns service URL - i.e.
POST - org.intermine.client.core.Request.RequestType: POST type.
PQUtil - Class in org.intermine.client.util: Static methods to make certain path-query based operations easier.

Q

QueryRequest(Request.RequestType, String, ContentType) - Constructor for class org.intermine.client.services.QueryService.QueryRequest: Constructor.
QueryService - Class in org.intermine.client.services: The QueryService class provides a mechanism for sending data queries to an InterMine webservice, and retrieving and parsing the results.
QueryService(String, String) - Constructor for class org.intermine.client.services.QueryService: Constructor.
QueryService.NumericSummary - Class in org.intermine.client.services: Result format for Numeric Summary information.
QueryService.QueryRequest - Class in org.intermine.client.services: The request class for handling queries - in particular this class is responsible for handling the query parameters.

R

remove(int) - Method in class org.intermine.client.results.ResultRowList
remove(Object) - Method in class org.intermine.client.lists.ItemList
remove(Object) - Method in class org.intermine.client.results.ResultRowList
removeAll(Collection) - Method in class org.intermine.client.lists.ItemList
removeAll(Collection<?>) - Method in class org.intermine.client.results.ResultRowList
removeTags(String...) - Method in class org.intermine.client.lists.ItemList: Remove some tags from this list.
removeTags(ItemList, String...) - Method in class org.intermine.client.services.ListService: Get the tags for a list after removing some from its tag set.
rename(String) - Method in class org.intermine.client.lists.ItemList: Rename this list on the server.
rename(ItemList, String) - Method in class org.intermine.client.services.ListService: Rename a list on the server, returning a list representing the new state.
Request - Interface in org.intermine.client.core: Client request interface.
Request.RequestType - Enum in org.intermine.client.core
RequestImpl - Class in org.intermine.client.core: Implementation of Request interface.
RequestImpl(Request.RequestType, String, ContentType) - Constructor for class org.intermine.client.core.RequestImpl: Constructor.
ResourceNotFoundException - Exception in org.intermine.client.exceptions: The ResourceNotFoundException is thrown by a service provider when an attempt is made to perform an operation upon a resource that cannot be found.
ResourceNotFoundException(String) - Constructor for exception org.intermine.client.exceptions.ResourceNotFoundException
ResourceNotFoundException(String, Throwable) - Constructor for exception org.intermine.client.exceptions.ResourceNotFoundException
ResourceNotFoundException(Throwable) - Constructor for exception org.intermine.client.exceptions.ResourceNotFoundException
ResourceNotFoundException(HttpConnection) - Constructor for exception org.intermine.client.exceptions.ResourceNotFoundException
resourceUrl - Variable in class org.intermine.client.core.Service
ResultException - Exception in org.intermine.client.exceptions: ResultException is the exception thrown when a request fails.
ResultException(String) - Constructor for exception org.intermine.client.exceptions.ResultException
ResultException(String, String) - Constructor for exception org.intermine.client.exceptions.ResultException: Construct an informative exception.
ResultException(String, Throwable) - Constructor for exception org.intermine.client.exceptions.ResultException
ResultException(Throwable) - Constructor for exception org.intermine.client.exceptions.ResultException
ResultRowList - Class in org.intermine.client.results: A representation of a result row that allows parsed objects to be retrieved by index, where the order of elements is the same as that of the view list of the originating PathQuery.
ResultRowList(String) - Constructor for class org.intermine.client.results.ResultRowList: Construct a new result row object backed by the JSONArray which can be parsed from the given String.
ResultRowList(JSONArray) - Constructor for class org.intermine.client.results.ResultRowList: Construct a new result row object backed by the given JSONArray.
ResultRowMap - Class in org.intermine.client.results: A class that represents a row of a result set as a map from column names to values.
ResultRowMap(String, List<String>) - Constructor for class org.intermine.client.results.ResultRowMap: Construct a result-row with a String as its backing data store.
ResultRowMap(JSONArray, List<String>) - Constructor for class org.intermine.client.results.ResultRowMap: Construct a result-row with a JSONArray as its backing data store.
ResultSet - Class in org.intermine.client.results: Common behaviour and interface for result sets.
ResultSet(BufferedReader) - Constructor for class org.intermine.client.results.ResultSet: Constructor with a reader.
ResultSet(String) - Constructor for class org.intermine.client.results.ResultSet: Constructor with a String.
ResultSet(HttpConnection) - Constructor for class org.intermine.client.results.ResultSet: Constructor.
retainAll(Collection<?>) - Method in class org.intermine.client.results.ResultRowList
RowResultSet - Class in org.intermine.client.results: A class for managing results received as a jsonrows result-set.
RowResultSet(BufferedReader, List<String>, int) - Constructor for class org.intermine.client.results.RowResultSet: Constructor with a reader.
RowResultSet(String, List<String>) - Constructor for class org.intermine.client.results.RowResultSet: Construct a new result-set from a string and a list of output columns.
RowResultSet(HttpConnection, List<String>, int) - Constructor for class org.intermine.client.results.RowResultSet: Construct a new result-set with an HttpConnection and a list of output columns.

S

Service - Class in org.intermine.client.core: This class provides the base level common functionality required to access any InterMine service.
Service(String, String, String) - Constructor for class org.intermine.client.core.Service: Constructor.
ServiceException - Exception in org.intermine.client.exceptions: ServiceException is a base class for all service exceptions.
ServiceException(String) - Constructor for exception org.intermine.client.exceptions.ServiceException
ServiceException(String, Throwable) - Constructor for exception org.intermine.client.exceptions.ServiceException
ServiceException(Throwable) - Constructor for exception org.intermine.client.exceptions.ServiceException
ServiceException(HttpConnection) - Constructor for exception org.intermine.client.exceptions.ServiceException: Exception is filled in with some detailed information from response.
ServiceFactory - Class in org.intermine.client.core: The Class that should be used for creating services.
ServiceFactory(String) - Constructor for class org.intermine.client.core.ServiceFactory: Construct a service factory with a default application name.
ServiceFactory(String, String) - Constructor for class org.intermine.client.core.ServiceFactory: Construct a factory for gaining access to specific resources.
ServiceFactory(String, String, String) - Constructor for class org.intermine.client.core.ServiceFactory: Deprecated.
This method causes username and password information to be insecurely transmitted over HTTP connections. Use the token authentication mechanism instead.
ServiceForbiddenException - Exception in org.intermine.client.exceptions: The ServiceForbiddenException is thrown by a service when an attempt is made to service that is disabled.
ServiceForbiddenException(String) - Constructor for exception org.intermine.client.exceptions.ServiceForbiddenException
ServiceForbiddenException(String, Throwable) - Constructor for exception org.intermine.client.exceptions.ServiceForbiddenException
ServiceForbiddenException(Throwable) - Constructor for exception org.intermine.client.exceptions.ServiceForbiddenException
ServiceForbiddenException(HttpConnection) - Constructor for exception org.intermine.client.exceptions.ServiceForbiddenException
ServiceUnavailableException - Exception in org.intermine.client.exceptions: The ServiceUnavailableException is thrown when an exception occurs that is temporary, the user should try it again.
ServiceUnavailableException(String) - Constructor for exception org.intermine.client.exceptions.ServiceUnavailableException
ServiceUnavailableException(String, Throwable) - Constructor for exception org.intermine.client.exceptions.ServiceUnavailableException
ServiceUnavailableException(Throwable) - Constructor for exception org.intermine.client.exceptions.ServiceUnavailableException
ServiceUnavailableException(HttpConnection) - Constructor for exception org.intermine.client.exceptions.ServiceUnavailableException
set(int, Object) - Method in class org.intermine.client.results.ResultRowList
setApplicationName(String) - Method in class org.intermine.client.core.ServiceFactory: Set the application name used to identify your requests to the server.
setAuthentication(String) - Method in class org.intermine.client.core.Service: Set the token to be used for authentication.
setAuthentication(String, String) - Method in class org.intermine.client.core.Service: Deprecated.
Use token based authentication instead (Service.setAuthentication(String) as this method will cause your user name and password to be transmitted insecurely across HTTP connections.
setAuthToken(String) - Method in interface org.intermine.client.core.Request: Set the authentication token for the request
setAuthToken(String) - Method in class org.intermine.client.core.RequestImpl
setCharSet(String) - Method in class org.intermine.client.core.ContentType: Sets character set of this content type.
setConnectionTimeout(int) - Method in class org.intermine.client.core.Service: Sets connection timeout.
setContent(File) - Method in class org.intermine.client.services.ListService.ListCreationInfo: Set the content for this creation request as coming from a file on the file-system.
setContent(InputStream) - Method in class org.intermine.client.services.ListService.ListCreationInfo: Set the content for this creation request as coming from an InputStream.
setContent(String) - Method in class org.intermine.client.services.ListService.ListCreationInfo: Set the content as coming from a string.
setContent(String...) - Method in class org.intermine.client.services.ListService.ListCreationInfo: Set the content for this request as coming from a set of strings, with each string representing one identifier.
setContent(Collection<String>) - Method in class org.intermine.client.services.ListService.ListCreationInfo: Set the content for this request as coming from a set of strings, with each string representing one identifier.
setContent(PathQuery) - Method in class org.intermine.client.services.ListService.ListCreationInfo: Set the content for this request as a query to run to find objects with.
setContentType(ContentType) - Method in interface org.intermine.client.core.Request
setContentType(ContentType) - Method in class org.intermine.client.core.RequestImpl
setCountFormat() - Method in class org.intermine.client.core.RequestImpl: Set the format as count format.
setFactory(ServiceFactory) - Method in class org.intermine.client.core.Service: Set the ServiceFactory this service can use to access other services.
setFormat(String) - Method in class org.intermine.client.core.RequestImpl: Set the format for the request.
setHeader(String, String) - Method in interface org.intermine.client.core.Request: Sets a request header.
setHeader(String, String) - Method in class org.intermine.client.core.RequestImpl: Sets a request header.
setJSONFormat() - Method in class org.intermine.client.core.RequestImpl: Set the format as JSON-Object format.
setJSONRowsFormat() - Method in class org.intermine.client.core.RequestImpl: Set the format as JSON-Rows format.
setMaxCount(int) - Method in class org.intermine.client.core.RequestImpl: Sets the maximum number of rows returned.
setName(String) - Method in class org.intermine.client.services.TemplateService.TemplateRequest: Sets the name of the template to be used.
setPage(Page) - Method in interface org.intermine.client.core.Request: Set the page for this request.
setPage(Page) - Method in class org.intermine.client.core.RequestImpl: Specify what section of the result set you wish to retrieve.
setParameter(String, String) - Method in interface org.intermine.client.core.Request: Sets parameter
setParameter(String, String) - Method in class org.intermine.client.core.RequestImpl: Sets parameter
setQuery(String) - Method in class org.intermine.client.services.QueryService.QueryRequest: Adds the query to be run.
setRetryCount(int) - Method in class org.intermine.client.util.HttpConnection: Sets retry count.
setServiceUrl(String) - Method in interface org.intermine.client.core.Request: Sets service URL.
setServiceUrl(String) - Method in class org.intermine.client.core.RequestImpl: Sets service URL.
setStart(int) - Method in class org.intermine.client.core.RequestImpl: Set the start parameter.
setSubType(String) - Method in class org.intermine.client.core.ContentType
setTemplateParameters(List<TemplateParameter>) - Method in class org.intermine.client.services.TemplateService.TemplateRequest: Set some template parameters.
setTimeout(int) - Method in class org.intermine.client.util.HttpConnection: Sets timeout.
setType(String) - Method in class org.intermine.client.core.ContentType: Sets main content type.
setType(Request.RequestType) - Method in interface org.intermine.client.core.Request
setType(Request.RequestType) - Method in class org.intermine.client.core.RequestImpl
setUrl(String) - Method in interface org.intermine.client.core.Request: Sets whole request URL.
setUrl(String) - Method in class org.intermine.client.core.RequestImpl: Sets whole request URL.
setXMLFormat() - Method in class org.intermine.client.core.RequestImpl: Set the format as XML format.
size() - Method in class org.intermine.client.lists.ItemList: Synonym for getSize()
size() - Method in class org.intermine.client.results.JsonRow
size() - Method in class org.intermine.client.results.ResultRowList
subList(int, int) - Method in class org.intermine.client.results.ResultRowList
subtract(Collection<ItemList>) - Method in class org.intermine.client.lists.ItemList: Remove the items in the given lists from this list.
subtract(Collection<ItemList>, Collection<ItemList>) - Method in class org.intermine.client.services.ListService: Subtract some lists from some other lists to produce a new list.
subtract(ItemList...) - Method in class org.intermine.client.lists.ItemList: Remove the items in the given lists from this list.
subtract(ItemList[], ItemList...) - Method in class org.intermine.client.services.ListService: Subtract some lists from some other lists to produce a new list.
subtract(ItemList, ItemList...) - Method in class org.intermine.client.services.ListService: Subtract some lists from some other lists to produce a new list.
subtract(ListService.ListOperationInfo, Collection<ItemList>) - Method in class org.intermine.client.lists.ItemList: Remove the items in the given lists from this list.
subtract(ListService.ListOperationInfo, Collection<ItemList>, Collection<ItemList>) - Method in class org.intermine.client.services.ListService: Subtract some lists from some other lists to produce a new list.
subtract(ListService.ListOperationInfo, ItemList...) - Method in class org.intermine.client.lists.ItemList: Remove the items in the given lists from this list.
subtract(ListService.ListOperationInfo, ItemList[], ItemList...) - Method in class org.intermine.client.services.ListService: Subtract some lists from some other lists to produce a new list.
subtract(ListService.ListOperationInfo, ItemList, ItemList...) - Method in class org.intermine.client.services.ListService: Subtract some lists from some other lists to produce a new list.

T

TabTableResult - Class in org.intermine.client.results: A utility class for parsing tab separated values in the results.
TabTableResult(String) - Constructor for class org.intermine.client.results.TabTableResult: Constructor.
TabTableResult(HttpConnection) - Constructor for class org.intermine.client.results.TabTableResult: Constructor.
TemplateParameter - Class in org.intermine.client.template: A simple class representing the group of parameters that define a template constraint
TemplateParameter(String, String, String, String) - Constructor for class org.intermine.client.template.TemplateParameter: Create a new TemplateParameter for a unary constraint (such as IS NULL).
TemplateParameter(String, String, String, String, String) - Constructor for class org.intermine.client.template.TemplateParameter: Create a new TemplateParameter for a simple value constraint.
TemplateParameter(String, String, Collection<String>, String) - Constructor for class org.intermine.client.template.TemplateParameter: Create a new TemplateParameter for a multi-value constraint.
TemplateRequest(Request.RequestType, String, ContentType) - Constructor for class org.intermine.client.services.TemplateService.TemplateRequest: Constructor.
TemplateService - Class in org.intermine.client.services: The TemplateService represents the connection to the resource that returns results of templates and number of results.
TemplateService(String, String) - Constructor for class org.intermine.client.services.TemplateService: Use ServiceFactory instead of constructor for creating this service.
TemplateService.TemplateRequest - Class in org.intermine.client.services: A subclass of RequestImpl relevant to template queries.
TEXT_COUNT - Static variable in class org.intermine.client.core.ContentType: A ContentType constant that describes the generic text/plain content type when requesting counts.
TEXT_PLAIN - Static variable in class org.intermine.client.core.ContentType: A ContentType constant that describes the generic text/plain content type.
TEXT_TAB - Static variable in class org.intermine.client.core.ContentType: A ContentType constant that describes the generic text/plain content type.
TEXT_XML - Static variable in class org.intermine.client.core.ContentType: A ContentType constant that describes the generic text/xml content type.
toArray() - Method in class org.intermine.client.results.ResultRowList
toArray(T[]) - Method in class org.intermine.client.results.ResultRowList
toString() - Method in class org.intermine.client.core.ContentType
toString() - Method in class org.intermine.client.core.RequestImpl
toString() - Method in class org.intermine.client.core.Version: Returns string representation of Version that is send with request.
toString() - Method in class org.intermine.client.lists.ItemList
toString() - Method in class org.intermine.client.results.Item
TransferInterruptedException - Exception in org.intermine.client.exceptions: TransferInterruptedException is the error thrown when a service returns an incomplete result set.
TransferInterruptedException() - Constructor for exception org.intermine.client.exceptions.TransferInterruptedException: Construct a new TransferInterrupted Exception.
TransferInterruptedException(String) - Constructor for exception org.intermine.client.exceptions.TransferInterruptedException
TransferInterruptedException(String, Throwable) - Constructor for exception org.intermine.client.exceptions.TransferInterruptedException
TransferInterruptedException(Throwable) - Constructor for exception org.intermine.client.exceptions.TransferInterruptedException

U

updateTags() - Method in class org.intermine.client.lists.ItemList: Make sure that the tags on this object are up-to-date with those stored on the server.
URLParser - Class in org.intermine.client.util: The URLParse class is util class for parsing URL.

V

valueOf(String) - Static method in enum org.intermine.client.core.Request.RequestType: Returns the enum constant of this type with the specified name.
values() - Static method in enum org.intermine.client.core.Request.RequestType: Returns an array containing the constants of this enum type, in the order they are declared.
Version - Class in org.intermine.client.core: Simple class representing service version.
Version(int, int, int) - Constructor for class org.intermine.client.core.Version: Constructor.
VERSION - Static variable in class org.intermine.client.core.Service: The version of this client library.

W

Widget - Class in org.intermine.client.widget: A representation of a list analysis widget, containing the metadata necessary to describe its usage and to choose how and whether to display its results.
Widget(String, String, String, String, String, Collection<String>, Collection<String>, String, String) - Constructor for class org.intermine.client.widget.Widget: Constructor.
WidgetService - Class in org.intermine.client.services: A class for managing widget operations.
WidgetService(String, String) - Constructor for class org.intermine.client.services.WidgetService: Use ServiceFactory instead of constructor for creating this service .

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XMLTableResult - Class in org.intermine.client.results: A utility class for parsing tab separated values in the results.
XMLTableResult(BufferedReader) - Constructor for class org.intermine.client.results.XMLTableResult: Constructor with a reader.
XMLTableResult(String) - Constructor for class org.intermine.client.results.XMLTableResult: Constructor.
XMLTableResult(HttpConnection) - Constructor for class org.intermine.client.results.XMLTableResult: Constructor.

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