Handling integrated biological data using Python (or R) and InterMine

GCCBOSC 2018

Trainers:

• Daniela Butano
• Leyla Ruzicka
• Yo Yehudi

Workshop description on sched

Schedule

Schedule

Requirements

Requirements

Useful Links

Python

• API slides
• Python Tutorial:
  • Python tutorial, empty exercises
  • Python tutorial, with answers
• Python API docs

R

• InterMineR on Bioconductor
• InterMineR vignettes
  • Intro to InterMineR
  • Genomic visualisations with FlyMine
  • Enrichment and visualisation

Other

• Interactive InterMine API docs
• InterMine UI intro slides

Which InterMine is for me?

• InterMine Registry

Support:

• There are lots of links on intermine.org - in particular see the “developers” section for documentation and the “contact” section for support.