Tutorials and videos

Training workshops and Exercises

We typically carry out a few training workshops each year - keep your eye on our calendar or twitter feed to find out when registration is open. The materials are available online and designed to be worked through in a self-led or tutor-led manner. These include:

Materials

• Intro To Data Analysis:
  • Intro to data analysis with the InterMine user interface
• Data Analysis Workflows:
• 🐍 Python
  • Python Pax6 Workflow (unsolved):
  • Python Pax6 Workflow (with answers):
• 🇷 Data analysis workflows in R
  • R Pax6 Workflow (unsolved)
  • R Pax6 Workflow (with answers)

Exercises

• 🇷 Producing figures and data visualisations in R (Advanced):
  • Enrichment and visualisations (unsolved):
  • Enrichment and visualisations (with answers):

Videos

Here’s a short list of video tutorials produced by community members. If you’d like yours added to the list please contact us!

• FlyMine intro videos - for the Drosophila-minded among us.
• TargetMine tutorials Tutorials for an InterMine designed to help identify drug targets.
• YeastMine videos - SGD has quite a broad range of tutorials based on S. Cerevisiae data.
• MouseMine at MGI - M. musculus InterMine intro
• Python tutorials - Tutorials to help you get familiarised with the intermine-python package. The tutorials are in the form of Jupyter-Notebooks.