training-workshops

List of InterMine training workshops and links to repos / materials

View the Project on GitHub intermine/training-workshops

Table of Contents

  1. Poll: What language(s) do you use, if any?
  2. Demo: Downloading and running code from the InterMine results tables
  3. Live Coding: Step-by-step analysis workflow
  4. Exercises: Further practice

Poll: What language(s) do you use, if any?

Getting started - what languages do you use as part of your work?

Demo: Downloading and running code from the InterMine results tables

We’ll demo this live on the day, but if you’d like to try this at home or on a work computer, you can follow our step-by-step guide to running an InterMine python script on your own computer (as opposed to running it in a Jupyter notebook, which we’ll see next).

Live Coding: Step-by-step analysis workflow

We’ll step through a workflow similar to the one we did earlier, only this time the analysis is done in code, rather than on HumanMine directly.

Exercise without answers (try this one first): Binder

Exercise with answers (good to peek if you’re stuck): Binder

Exercises: Further practice

Our python tutorial series provides walkthroughs for most common InterMine operations. Try working through these tutorials: