Table of Contents

1. Poll: What language(s) do you use, if any?
2. Demo: Downloading and running code from the InterMine results tables
3. Live Coding: Step-by-step analysis workflow
4. Exercises: Further practice

Poll: What language(s) do you use, if any?

Getting started - what languages do you use as part of your work?

• Please take 20 seconds to vote in this poll (closes 14 feb 2019) - “none” is an acceptable answer!
• Poll results

Demo: Downloading and running code from the InterMine results tables

We’ll demo this live on the day, but if you’d like to try this at home or on a work computer, you can follow our step-by-step guide to running an InterMine python script on your own computer (as opposed to running it in a Jupyter notebook, which we’ll see next).

Live Coding: Step-by-step analysis workflow

We’ll step through a workflow similar to the one we did earlier, only this time the analysis is done in code, rather than on HumanMine directly.

Exercise without answers (try this one first):

Exercise with answers (good to peek if you’re stuck):

Exercises: Further practice

Our python tutorial series provides walkthroughs for most common InterMine operations. Try working through these tutorials:

• Tutorial 1: The basics of a query
  • (exercise)
  • (with completed answers)
• Tutorial 2: Adding constraints to a query
  • (exercise)
  • (with completed answers)
• Tutorial 5: Query results
  • (exercise)
  • (with completed answers)
• Tutorial 7: Templates
  • (exercise)
  • (with completed answers)