Publications & Citing InterMine
Quick citation information
If you use the InterMine framework in your research, we would appreciate it if you cite the following publications:
- InterMine: a flexible data warehouse system for the integration and analysis of heterogeneous biological data. Smith RN et al. (2012). Bioinformatics. View on PubMed
- InterMine: extensive web services for modern biology. Kalderimis A et al. (2014). Nucleic Acids Res. View on PubMed
Citing software is just as important as citing any othe important sources in your research. If you’re not sure whether or not to cite something, Shouldacite can help you decide if you should (hint, the answer’s probably yes!). If you use InterMine to do any of the following activities, please cite InterMine following our citation guidelines:
- Create your own instance of InterMine
- Use an InterMine to gather data for your research
- Used an InterMine API to create an interesting or exciting application or script
Also, don’t forget to let us know about it! We love hearing from our community members, and we’d love to add your publication or citation to our list!
Below is a partial list of publications by InterMine core team members or InterMine community members.
Publications about Community-run InterMines
MouseMine: a new data warehouse for MGI.
Motenko H, Neuhauser SB, O'Keefe M, Richardson JE
The YeastGenome app: the Saccharomyces Genome Database at your fingertips
Wong ED, Karra K, Hitz BC, Hong EL, Cherry JM
Publications by the InterMine Team
Cross-organism analysis using InterMine.
Lyne Rachel, Sullivan Julie, Butano Daniela, Contrino Sergio, Heimbach Joshua, Hu Fengyuan, Kalderimis Alex, Lyne Mike, Smith N. Richard, Štěpán Radek, Balakrishnan Rama, Binkley Gail, Harris Todd, Karra Kalpana, Moxon A. T. Sierra, Motenko Howie, Neuhauser Steven, Ruzicka Leyla, Cherry Mike, Richardson Joel, Stein Lincoln, Westerfield Monte, Worthey Elizabeth and Micklem Gos
InterMine: extensive web services for modern biology
Kalderimis A, Lyne R, Butano D, Contrino S, Lyne M, Heimbach J, Hu F, Smith R, Stěpan R, Sullivan J, Micklem G
InterMOD: integrated data and tools for the unification of model organism research
Sullivan J, Karra K, Moxon SA, Vallejos A, Motenko H, et al.
InterMine: a flexible data warehouse system for the integration and analysis of heterogeneous biological data
Smith RN, Aleksic J, Butano D, Carr A, Contrino S, Hu F, Lyne M, Lyne R, Kalderimis A, Rutherford K, Stepan R, Sullivan J, Wakeling M, Watkins X, and Micklem G
YeastMine - an integrated data warehouse for Saccharomyces cerevisiae data as a multipurpose tool-kit
Balakrishnan R, Park J, Karra K, Hitz BC, Binkley G, Hong EL, Sullivan J, Micklem G, and Michael JC
modMine: flexible access to modENCODE data
Contrino S, Smith RN, Butano D, Carr A, Hu F, Lyne R, Rutherford K, Kalderimis A, Sullivan J, Carbon S, Kephart ET, Lloyd P, Stinson EO, Washington NL, Perry MD, Ruzanov P, Zha Z, Lewis SE, Stein LD, and Micklem G