| AddColumnAction |
AddColumnAction adds new column to existing WebTable that should be displayed.
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| AddToBagAction |
Action to save a single object o an existing bag.
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| ApiJavaController |
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| ApiPerlController |
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| AspectController |
Contoller for a single data set tile embedded in a page.
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| AvailableColumnsController |
Controller for availableColumns.tile.
|
| BagBuildController |
Controller Action for buildBag.jsp
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| BagDetailsAction |
Action that builds a PagedCollection to view a bag.
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| BagDetailsController |
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| BagUpgradeAction |
An action that prepare a BagQueryResult and save it into the session.
|
| BagUploadConfirmAction |
Action class for saving a bag from the bagUploadConfirm page into the user profile.
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| BagUploadConfirmController |
Controller for the bagUploadConfirm; retrieve an IDResolutionService job id
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| BagUploadConfirmForm |
Form for the bagUploadConfirm page.
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| BagUploadConfirmIssueController |
Controller for the bagUploadConfirmIssue tile.
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| BeginAction |
Prepare templates and news to be rendered on home page
|
| BuildBagAction |
An action that makes a bag from text.
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| BuildBagForm |
Form bean to represent the inputs needed to create a bag from user input.
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| ChangePasswordAction |
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| ChangePasswordForm |
Form bean to represent the inputs needed to change a password from user input.
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| ChangeTableAction |
Implementation of DispatchAction.
|
| ChangeTableSizeAction |
Changes the size of the results displayed.
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| ChangeTableSizeForm |
Form bean for changing the page size.
|
| ClassChooserController |
Gets list of help text blurbs for each class, and passes them on to the display page.
|
| CollectionDetailsAction |
Action that creates a table of collection elements for display.
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| CollectionTableAction |
Action that creates a table of collection elements for display in a table widget.
|
| ContactAction |
Action handles submission of user feedback form.
|
| ContactForm |
Form bean representing feedback form.
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| ConvertBagController |
|
| CountTableController |
Start a count in a separate thread of the number of rows in the PagedTable given by the
"resultsTable" request attribute.
|
| CreateAccountAction |
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| CreateAccountForm |
Form bean to represent the inputs to create a new user account
|
| CreateTemplateAction |
Action to create a new TemplateQuery from current query.
|
| CSVExportForm |
A form to hold options for CSV and tab separated output.
|
| CurrentQueryAction |
Action to display the query builder (if there is a current query) or redirect to
project.sitePrefix.
|
| DisplayLookupMessageHandler |
|
| EditPropertiesAction |
A controller to edit the properties of a running application.
|
| EditPropertiesForm |
An overly verbose way of passing parameters back to the controller.
|
| EditTemplateAction |
Action to edit a user template query.
|
| EnrichmentWidgetForm |
|
| ErrorMessagesController |
Take the messages stored in the session which are not using ActionMessages or ActionErrors and
put them in the request
|
| ExportController |
Controller to initialise for the export.tile
|
| ExportOptionsController |
Controller for exportOptions.tile
|
| ExportQueryAction |
Export the current query in XML format.
|
| ExportTagsAction |
Export tags.
|
| FavouritesController |
Controller for the starTemplate tile.
|
| FileDownloadAction |
This is a generic action to download file from any given directory.
|
| FindInListAction |
Action to search a list for an identifier and then highlight it on the list details page.
|
| FindInListForm |
Form for FindInListAction.
|
| ForwardParameters |
Utility wrapper class for programatically adding parameters to ActionForward paths.
|
| GetAttributeAsFileAction |
Provide an attribute value as a file
|
| GotoWebSearchableAction |
Action handles search.
|
| HeartbeatAction |
Takes a parameter "type" with value "webapp" or "query" and prints "OK"
to the client if everything is ok, otherwise something else.
|
| HtmlHeadController |
Controller for the html head tile.
|
| ImportQueriesAction |
Imports query in XML format and forward user to the query builder.
|
| ImportQueriesForm |
Form bean representing query import form.
|
| ImportTagsAction |
Import tags.
|
| ImportTagsForm |
Form bean representing tags import form.
|
| ImportXMLForm |
Form bean representing a generic import form.
|
| InitialiserPlugin |
Initialiser for the InterMine web application.
|
| InlineTagEditorController |
Controller for the inline tag editing tile
|
| InterMineAction |
An InterMine specific version of Action.
|
| InterMineDispatchAction |
An InterMine specific version of DispatchAction.
|
| InterMineExceptionHandler |
InterMine implementation of the Struts ExceptionHandler
|
| InterMineLookupDispatchAction |
An InterMine specific version of LookupDispatchAction.
|
| InterMineRequestProcessor |
A RequestProcessor that sends you back to the start if your session isn't valid.
|
| InvitationAction |
Action that processes invitations.
|
| InvitationForm |
A form that contains the information for requests that invite users to share resources.
|
| KeywordSearchResultsController |
Controller for keyword search.
|
| LabelsSummaryAction |
An action that presents how all the labels configured for classes and their
top-level fields appear.
|
| ListTagsController |
Controller for tag display tile on the lists page
|
| LoadQueryAction |
Implementation of Action that sets the current Query for
the session from some random XML the user has passed in, and maybe executes it.
|
| LoadTemplateAction |
Implementation of Action that runs a template
|
| LoginAction |
Action to handle button presses on the main tile
|
| LoginController |
Controller for the login page.
|
| LoginForm |
The main form, using for editing constraints
|
| LogoutAction |
Action that invalidates the user session effectively logging the user out of
intermine.
|
| ModifyBagAction |
Implementation of Action to modify bags
|
| ModifyBagDetailsAction |
|
| ModifyBagDetailsForm |
|
| ModifyBagForm |
Form bean to used in combining bags
|
| ModifyDetails |
Action to handle events related to displaying Report templates and displayers
|
| ModifyQueryAction |
Action that results from a button press on the user profile page.
|
| ModifyQueryChangeAction |
Implementation of Action that modifies a saved query or bag.
|
| ModifyQueryForm |
Form bean to used in combining queries
|
| ModifySuperUserAction |
Implementation of Action to modify superuser role
|
| ModifySuperUserForm |
Form bean used in user admin page
|
| ModifyTemplateAction |
Action that results from a button press on the user profile page.
|
| ModifyTemplateForm |
Form bean used on the saved template form.
|
| MyMineController |
Tiles controller for history tile (page).
|
| ObjectTrailController |
Controller for the object trail tile.
|
| ObjectTrailController.TrailElement |
Bean passed to JSP to represent an element in the trail.
|
| ObjectViewController |
Controls display of data in results tables.
|
| PasswordResetAction |
Action to change a user's password with the authority of a token previously emailed to them.
|
| PasswordResetController |
Controller for the password reset page.
|
| PasswordResetForm |
The form for resetting a password.
|
| PollQueryAction |
Repeatedly poll the status of a running query and forward client to appropriate page
each time.
|
| PortalQueryAction |
The portal query action handles links into flymine from external sites.
|
| QueryBuilderChange |
Action to handle links on main query builder tile.
|
| QueryBuilderConstraintAction |
Action to handle button presses on the main tile
|
| QueryBuilderConstraintController |
Controller for the main constraint editing tile
|
| QueryBuilderConstraintForm |
The form used for editing QueryBuilder constraints
|
| QueryBuilderController |
Controller for the main query builder tile.
|
| QueryBuilderSummaryController |
Controller for the QueryBuilder summary tile.
|
| QueryBuilderViewAction |
Action to run constructed query.
|
| QueryBuilderViewChange |
Action to handle links on view tile
|
| QueryClassSelectAction |
Implementation of Action that processes
QueryClass selection form.
|
| QueryClassSelectForm |
Form bean for selection of a new query class.
|
| QueryForm |
Action form that holds query XML.
|
| ReportAspectController |
Controller for the reportAspect tile.
|
| ReportController |
New objectDetails.
|
| ReportDisplayerController |
Execute a ReportDisplayer placed on the context.
|
| ReportInListController |
|
| ReportTemplateController |
Controller for an inline table created by running a template on a report page.
|
| RequestPasswordAction |
Action to handle button presses RequestPasswordForm
|
| RequestPasswordForm |
Form used to request a password
|
| ResourceFinder |
A class for finding resources in the WEB-INF directory at run-time based on patterns.
|
| ResultsAction |
ResultsAction is called before results table is rendered.
|
| RunQueryAction |
Run a query as passed in directly as XML.
|
| SaveBagAction |
Saves selected items in a new bag or combines with existing bag.
|
| SaveBagForm |
Form bean for the results table and bag creation form.
|
| SaveFromIdsToBagAction |
Saves selected items with InterMine ids and a Type in a new bag or combines
with existing bag.
|
| SaveQueryAction |
Implementation of Action that saves a Query from a session.
|
| SaveQueryForm |
Form bean to represent the inputs to the query saving action
|
| SharingBagUsersController |
Controller for the inline tag editing tile
|
| SubMenuController |
Controller for the submenu at the top of every page
|
| SummariseTemplatesAction |
Action to summarise all templates.
|
| TableController |
Implementation of TilesAction.
|
| TableExportAction |
Implementation of Action that allows the user to export a
PagedTable to a file.
|
| TableExportForm |
Form to hold options for exporting.
|
| TemplateAction |
Action to handle submit from the template page.
|
| TemplateController |
Controller for the template tile.
|
| TemplateForm |
Form to handle input from the template page
|
| TemplateListController |
Controller for the template list tile.
|
| TemplateProblemsController |
Called before templateProblems.jsp
|
| TemplatesController |
Tiles controller for templates tile (page).
|
| TemplateSettingsForm |
Form used when building a template.
|
| TemplatesExportAction |
Exports templates to XML.
|
| TemplatesImportAction |
Imports templates in XML format.
|
| TemplatesImportForm |
Form bean representing template import form.
|
| TreeAction |
Implementation of Action that modifies a tree.
|
| TreeController |
Perform initialisation steps for displaying a tree
|
| TriageBagAction |
An action to handle reparative actions to bags.
|
| TriageBagForm |
|
| UsersController |
Controller for the users admin page
|
| UserTemplateAction |
Make some change to a user template.
|
| WebSearchableListController |
Controller for webSearchableList.tile
|
| WebserviceCodeGenAction |
Action to handle the web service code generation.
|
| WidgetForm |
|