Package org.intermine.task

Class TSVFileReaderTask

java.lang.Object

org.apache.tools.ant.ProjectComponent

org.apache.tools.ant.Task

org.intermine.task.DynamicAttributeTask

org.intermine.task.DirectDataLoaderTask

org.intermine.task.FileDirectDataLoaderTask

org.intermine.task.TSVFileReaderTask

public class TSVFileReaderTask
extends FileDirectDataLoaderTask

Read a file of tab separated values. Use one column as the key to look up objects and use the other columns to set fields in that object.

Author:

Kim Rutherford

Field Summary

Fields inherited from class org.intermine.task.FileDirectDataLoaderTask

fileSets

Fields inherited from class org.intermine.task.DirectDataLoaderTask

sourceName

Fields inherited from class org.apache.tools.ant.Task

description, location, target, taskName, taskType, wrapper

Fields inherited from class org.apache.tools.ant.ProjectComponent

project

Constructor Summary

Constructors

Constructor	Description
TSVFileReaderTask()

Method Summary

Modifier and Type	Method	Description
void	processFile(java.io.File file)	Query all objects of the class given by the className specified in the configurationFile.
void	setConfigurationFile(java.io.File configurationFile)	Set the configuration file to use.

Methods inherited from class org.intermine.task.FileDirectDataLoaderTask

addFileSet, process

Methods inherited from class org.intermine.task.DirectDataLoaderTask

execute, getDirectDataLoader, getIntegrationWriter, setIgnoreDuplicates, setIntegrationWriterAlias, setSourceName, setSourceType

Methods inherited from class org.intermine.task.DynamicAttributeTask

configureDynamicAttributes

Methods inherited from class org.apache.tools.ant.Task

getDescription, getLocation, getOwningTarget, getRuntimeConfigurableWrapper, getTaskName, getTaskType, getWrapper, handleErrorFlush, handleErrorOutput, handleFlush, handleInput, handleOutput, init, isInvalid, log, log, maybeConfigure, perform, reconfigure, setDescription, setLocation, setOwningTarget, setRuntimeConfigurableWrapper, setTaskName, setTaskType

Methods inherited from class org.apache.tools.ant.ProjectComponent

getProject, setProject

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

TSVFileReaderTask

public TSVFileReaderTask()

Method Detail

setConfigurationFile

public void setConfigurationFile(java.io.File configurationFile)

Set the configuration file to use.

Parameters:

configurationFile - the configuration File

processFile

public void processFile(java.io.File file)

Query all objects of the class given by the className specified in the configurationFile. Set fields in the objects by using the tab separated files as input.

Specified by:

processFile in class FileDirectDataLoaderTask

Parameters:

file - the File to process

Throws:

org.apache.tools.ant.BuildException - if an ObjectStore method fails