RatMine released at RGD

The Rat Genome Database (RGD) have released an InterMine containing rat genome, protein and SNP data: http://ratmine.mcw.edu/ratmine. They have also made a great video which introduces the functionality of RatMine and InterMine in general.

RatMine was built as part of a joint project between InterMine RGD (rat), SGD (yeast) and ZFIN (zebrafish) to deploy an InterMine at each of the model organism database sites and develop new methods of interoperability for cross-organism research.

FlyTF now uses InterMine

FlyTF http://www.flytf.org is a database of computationally predicted and/or experimentally verified site-specific transcription factors (TFs) in the fruit fly. They have just released version 2 which now uses InterMine to add flexible querying and analysis of lists to their site.

A paper describing FlyTF has just been published in the NAR Database Issue.

0.92 Release

We've released InterMine 0.92, there is a new subversion branch and tar.gz. The main changes are some improvements to the way integration keys and priorities are configured and validated, a BioPax parser, performance enhancements and some webapp fixes.

See the release notes and details on upgrading.

Updated on 23/11/09 13:51:14

InterMine

InterMine is a powerful open source data warehouse system. Using InterMine, you can create databases of biological data accessed by sophisticated web query tools. Parsers are provided for integrating data from several common biological formats and there is a framework for adding your own data. InterMine includes an attractive, user-friendly web interface that works 'out of the box' and can be easily customised for your specific needs.

All InterMine code is freely available under the LGPL license. See checkout information.

Find out more - What is InterMine?

InterMine was developed to enable FlyMine and is now used in other projects. See FlyMine for a working example, click 'Take a tour' to explore features.

Current version 0.92. See instructions for upgrading to 0.92. Release notes here.

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InterMine is actively developed by the FlyMine & Cambridge UK ModENCODE Teams at the Cambridge Systems Biology Centre. FlyMine and InterMine are funded by the Wellcome Trust.